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Contents:

  • Introduction
  • Getting started
  • Sharing projects
  • Advanced usage
    • Jupyter notebooks
    • Napari
    • AnnData Handling in TissUUmaps
    • The TMAP file format
  • Support
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  • Advanced usage
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Advanced usageΒΆ

  • Jupyter notebooks
    • tissuumaps.jupyter
  • Napari
  • AnnData Handling in TissUUmaps
    • Loading AnnData Objects
    • AnnData Specification in TissUUmaps
    • Dropdowns
    • Example
  • The TMAP file format
    • BoundingBox
    • CollectionLayout
    • CompositeMode
    • DropdownOption
    • ExpectedHeader
    • ExpectedRadios
    • Filter
    • Layer
    • LayerClip
    • LayerFilter
    • LayoutAxis
    • MarkerFile
    • RegionFile
    • Setting
    • menuButton
    • Example of a .tmap file
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