The project is funded by the European Research Council, through an ERC consolidator grant to Carolina Wählby (ERC CoG 682810).

Important support was also provided via the Swedish Foundation for Strategic Research (SSF), via the SysMic project (SB16-0046), with Staffan Strömblad as PI and Carolina Wählby as co-PI.

Some of the activities are also funded by SSF Big Data grant on ‘Hierarchical Analysis of Temporal and Spatial Image Data - From intelligent data acquisition via smart data-management to confident predictions’, where Carolina Wählby acts as PI.

TissUUmaps is also supported as a technology development project which is part of the SciLifeLab BioImageInformatics Facility of SciLifeLab, a national infrastructure for life science research in Sweden.