Projects with "In situ sequencing"

TissUUmaps 3 projects

Older projects made with TissUUmaps 3.

Points2Regions

Fast, interactive clustering of imaging-based spatial transcriptomics data, as a TissUUmaps plugin. Try it on human heart, mouse brain or your own data.

• In situ sequencing
• Clustering
• Plugin

Open in TissUUmaps 3

Developmental human heart

De novo modelling of cell-type signatures in the developing human heart, from in situ sequencing data analysed with spage2vec.

• In situ sequencing
• Cell typing

Open in TissUUmaps 3

Human Developmental Lung Cell Atlas

Single-cell RNA sequencing, in situ sequencing, SCRINSHOT and Spatial Transcriptomics of the developing human lung, from 5 to 14 post-conception weeks.

• scRNA-seq
• In situ sequencing
• SCRINSHOT
• Spatial Transcriptomics

Open in TissUUmaps 3

Mouse brain compartments

Spatial compartments of the mouse brain, identified automatically from in situ sequencing data, on four sections.

• In situ sequencing
• Clustering

Open in TissUUmaps 3

Spage2vec

Unsupervised representation of localized spatial gene expression signatures, on in situ sequencing, osmFISH and MERFISH data.

• In situ sequencing
• osmFISH
• MERFISH

Open in TissUUmaps 3