In this video, we show how to use TissUUmaps to visualize the outputs from two well known ST analysis frameworks: Giotto and Squidpy.

The original tutorial for analyzing 10X Visium (Giotto) can be found here, and the code for integration with TissUUmaps in giotto2tmap.py.

The original tutorial for Analyze Visium H&E data (Squidpy) can be found here, and the code for integration with TissUUmaps in squidpy2tmap.ipynb.