TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.

You can download TissUUmaps, read the TissUUmaps documentation and follow our guides and tutorials to get started. You can also access the TissUUmaps project gallery with interactive examples to explore data from in situ sequencing and spatial transcriptomics experiments and view localized quantification of cell and tissue morphology, including links to publications. For seeing examples of TissUUmaps compatibility with other platforms you can access the tutorials page.

Read more about TissUUmaps 3 in our preprint on bioRxiv.